Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015935363.1_cds_XP_016481204.1_72557
CDS Infomation

[gene=LOC107802251] [db_xref=GeneID:107802251] [protein=pentatricopeptide repeat-containing protein At3g53170-like isoform X2] [protein_id=XP_016481204.1] [location=complement(join(4601..4626,4899..5985,7539..7871))] [gbkey=CDS]
Sequence

ATGCAGTGCGCTATGGAGCTTCAATTGTCTTCCACTTTCCTCTCATCCTCCATCTCCAGC
CCCTATTTGATGATAGTCCCCAAACAACATATAAACCAACAAAAAGCACAAGTTTTGAGT
ATCAAATCATCAAGTTTAAATCCAGAAAACACTTCGGGAGGCCTGCAAAAAAGTTCAAAG
AAAGATCTGTCTCGTTTACTGAGAACAGAAGCCGCTATTAGAGGTATCGAGAGGAAAGCC
GACTCTGAGAAATACACTAACCTTTGGCCCAAAGCTGTTTTGGAGGCTCTCGATGATTCT
ATTAAACAAAACCGTTGGGACTCTGCTCTTAAGATTTTTGGCCTTCTTCGCAAGCAACAT
TGGTATGAGCCAAGATGCCACACATATGCTAAGCTTTTGGTAATGCTCGGCAAGTGCAAG
CAGCCAAATCAAGCTAGCTTACTTTTTGAGATCATGCTAGCCGATGGGCTTCAACCAACA
CTAGATGTTTACACTGCACTTGTTAGTGCATATGGCTTTAGTGGCCTCCTTGATGAAGCG
CTGCGCACCATTGATGATATGAAATCAGTTAGTAATTGCAAGCCTGATGTGTATACTTAC
TCAATCCTTATTAATTGCTGCACTAAATTTCGTCGTTTTGATATGATTGAATATATTTTA
GCCGAGATGGCATATTTGGGAATAGAATGTACTTCTGTGACTTACAATACCTTAATTGAC
GGCTATGGTAAAGCTAAGCTGTTTGAGCTGATGGAAAGCTCCTTGACAGATATGATCGAA
AGTGAGACTGCCTCTCCAGACGTTTTCACCTTGAATTCAGTAATTGGGTCCTATGGTTGC
TGTGGGAAACTTGAGATAATGGAGAAATGGTTTGAAAGATTTCGGGTAATGGGAATAAAG
CCAGATGTTATGACATTTAACATTCTAATCAAGTCATATGGAAGAGCTGGCATGTATCAG
AAAATGGAGTCTGTACTTGATTTTATGAGGAACCGGTTCTATTCCCCAACAGTTGTGACA
TACAATATTATCATTGAGATATTTGGGAAGGTGGGACTTATTATGAACATGGAAGAGTTT
TTCCTACAGATGAAGCACCAAGGAGTGAAGCCAACCTCATTCACTTATTGCTCTCTTGTT
AGTGCTTATGGTAGAGCTGGACTTTTGGAAAAAGTTGATTCAATCATGAGGCAAGTAGAG
AATTCGGACGTAGTTCTGGATACTCCTTTTTTCAATTGCATCATTAGTACTTTTGGTCAA
GCTGGTGATTTAGAGAGGATGGTGGCATTGTTCTTGGAAATGAAGGTCAGAAAATGTAAA
CCAAACTACATCACATTTTCTACCATGATCCAGGCCTACGATTCACAAGGGATGATCGAA
GCTGCCAATGACTTGAAGAGTAAACTGATTACTGCTTGTGAATCAAATGAAATGATCAGA
GGCTAG

Peptide Sequence

PEP ID

XP_016481204.1
PEP Infomation

PREDICTED: pentatricopeptide repeat-containing protein At3g53170-like isoform X2 [Nicotiana tabacum]
Sequence

MQCAMELQLSSTFLSSSISSPYLMIVPKQHINQQKAQVLSIKSSSLNPENTSGGLQKSSK
KDLSRLLRTEAAIRGIERKADSEKYTNLWPKAVLEALDDSIKQNRWDSALKIFGLLRKQH
WYEPRCHTYAKLLVMLGKCKQPNQASLLFEIMLADGLQPTLDVYTALVSAYGFSGLLDEA
LRTIDDMKSVSNCKPDVYTYSILINCCTKFRRFDMIEYILAEMAYLGIECTSVTYNTLID
GYGKAKLFELMESSLTDMIESETASPDVFTLNSVIGSYGCCGKLEIMEKWFERFRVMGIK
PDVMTFNILIKSYGRAGMYQKMESVLDFMRNRFYSPTVVTYNIIIEIFGKVGLIMNMEEF
FLQMKHQGVKPTSFTYCSLVSAYGRAGLLEKVDSIMRQVENSDVVLDTPFFNCIISTFGQ
AGDLERMVALFLEMKVRKCKPNYITFSTMIQAYDSQGMIEAANDLKSKLITACESNEMIR
G

Transcript Sequence

Gene sequence data has not been registered.